Compiling in Linux - Revision history

Nairnj: /* Other Linux Systems */

2023-03-04T19:51:51Z

Other Linux Systems

← Older revision		Revision as of 19:51, 4 March 2023
Line 75:		Line 75:
	After setting the variables, use a standard <tt>make</tt> command to compile the code. If it compiles, but will not load the <tt>xerces</tt> library at runtime, you will have to find the system-dependent method to provide the path to the <tt>xerces</tt> library and make sure the system can find the <tt>xerces</tt> library.		After setting the variables, use a standard <tt>make</tt> command to compile the code. If it compiles, but will not load the <tt>xerces</tt> library at runtime, you will have to find the system-dependent method to provide the path to the <tt>xerces</tt> library and make sure the system can find the <tt>xerces</tt> library.

	If you successfully get the code compiled and running on a system that is not listed above, please edit ~~the pages~~ to document it, or send email to [mailto:John.Nairn@oregonstate.edu John.Nairn@oregonstate.edu] with the system name and step-by-step instructions for compiling and running the code.		If you successfully get the code compiled and running on a system that is not listed above, please edit this wiki page to document it, or send email to [mailto:John.Nairn@oregonstate.edu John.Nairn@oregonstate.edu] with the system name and step-by-step instructions for compiling and running the code.

Nairnj: /* Other Linux Systems */

2023-03-04T19:50:57Z

Other Linux Systems

← Older revision		Revision as of 19:50, 4 March 2023
Line 67:		Line 67:
	# Compiling of [[OSParticulas]], [[NairnMPM]], and [[NairnFEA]] needs access to all the <tt>xerces</tt> header files. These are provided in the <tt>xerces</tt> source code downloads. Even if your system has the <tt>xerces</tt> binary installed, it may not have the header files. You can get them by [http://xml.apache.org/dist/xerces-c/stable/ downloading the xerces source code], even though you will not need to build it.		# Compiling of [[OSParticulas]], [[NairnMPM]], and [[NairnFEA]] needs access to all the <tt>xerces</tt> header files. These are provided in the <tt>xerces</tt> source code downloads. Even if your system has the <tt>xerces</tt> binary installed, it may not have the header files. You can get them by [http://xml.apache.org/dist/xerces-c/stable/ downloading the xerces source code], even though you will not need to build it.

	Once a suitable compiler, the <tt>xerces</tt> binary, and <tt>xerces</tt> header files are installed, compilation may require editing the <tt>makefile</tt>s in the <tt>nairn-mpm-fea</tt> folders. Specifically, you will need to edit the <tt>makefile</tt>s in the <tt>NairnMPM/build</tt>and <tt>NairnFEA/build</tt> directories and set at least the following variables:		Once a suitable compiler, the <tt>xerces</tt> binary, and <tt>xerces</tt> header files are installed, compilation may require editing the <tt>makefile</tt>s in the <tt>nairn-mpm-fea</tt> folders. Specifically, you will need to edit the <tt>makefile</tt>s in the <tt>NairnMPM/build</tt>and <tt>NairnFEA/build</tt> directories and set at least the following variables if the default settings are not correct for your system:

	# The variable <tt>CC</tt>: set it to the desired <tt>C++</tt> compiler.		# The variable <tt>CC</tt>: set it to the desired <tt>C++</tt> compiler.

Nairnj: /* Other Linux Systems */

2023-03-04T19:49:02Z

Other Linux Systems

← Older revision		Revision as of 19:49, 4 March 2023
Line 61:		Line 61:
	== Other Linux Systems ==		== Other Linux Systems ==

	Compiling on any Linux/Unix system should be straightforward, with the most difficult step usually being installing and ~~linking~~ to the <tt>xerces</tt> library. The key steps needed for successful compilation:		Compiling on any Linux/Unix system should be straightforward, with the most difficult step usually being installing and link to the <tt>xerces</tt> library. The key steps needed for successful compilation:

	# Use a compatible <tt>C++</tt> compiler. To compile parallel version of the code, you need a compiler that supports <tt>OpenMP</tt>. For gcc, the version should be 4.8 or newer. Non-gcc compilers such as clang-mp work as well.		# Use a compatible <tt>C++</tt> compiler. To compile parallel version of the code, you need a compiler that supports <tt>OpenMP</tt>. For gcc, the version should be 4.8 or newer. Non-gcc compilers such as clang-mp work as well.

Nairnj: /* Compilation on Supported Linux Systems */

2023-03-04T19:48:44Z

Compilation on Supported Linux Systems

← Older revision		Revision as of 19:48, 4 March 2023
Line 51:		Line 51:
	== Compilation on Supported Linux Systems ==		== Compilation on Supported Linux Systems ==

	The commands for the above system will compile all source code and install the executables in <tt>nairn-mpm-fea/NairnMPM/input</tt> or <tt>nairn-mpm-fea/NairnFEA/input</tt>, respectively.		The commands for the above system will compile all source code and install the executables in <tt>nairn-mpm-fea/NairnMPM/input</tt> or <tt>nairn-mpm-fea/NairnFEA/input</tt>, respectively. If you follow successful compilation with

			make install

			the relevant executable and DTD file will be copied to a <tt>bin</tt> folder in your home directory (which should exist). It is convenient to have that directory in your default <tt>$PATH</tt> variable such that launching calculations only needs the binary name.

	Besides the <tt>SYSTEM</tt> parameter to specify a supported system, you can pass additional parameters to the <tt>make</tt> command to alter the compilation process. See comments in the <tt>makefile</tt> for all the latest options.		Besides the <tt>SYSTEM</tt> parameter to specify a supported system, you can pass additional parameters to the <tt>make</tt> command to alter the compilation process. See comments in the <tt>makefile</tt> for all the latest options.

Nairnj: /* Zia Workstation (CISRO) */

2023-03-04T19:45:32Z

Zia Workstation (CISRO)

← Older revision		Revision as of 19:45, 4 March 2023
Line 40:		Line 40:

	cd nairn-mpm-fea/NairnMPM/build		cd nairn-mpm-fea/NairnMPM/build
	make -j N ~~YSTEM~~=zia		make -j N SYSTEM=zia

	and for [[NairnFEA]] are:		and for [[NairnFEA]] are:

Nairnj: /* Other Linux Systems */

2022-01-22T07:11:30Z

Other Linux Systems

← Older revision		Revision as of 07:11, 22 January 2022
Line 59:		Line 59:
	Compiling on any Linux/Unix system should be straightforward, with the most difficult step usually being installing and linking to the <tt>xerces</tt> library. The key steps needed for successful compilation:		Compiling on any Linux/Unix system should be straightforward, with the most difficult step usually being installing and linking to the <tt>xerces</tt> library. The key steps needed for successful compilation:

	# Use a compatible <tt>C++</tt> compiler~~. The code has been tested with at least <tt>gcc 3.2</tt> through <tt>gcc 4.8</tt>)~~. To compile parallel version of the code, you need a compiler that supports <tt>OpenMP</tt>. ~~Note that problems have been noticed with <tt>~~gcc 4.~~2</tt>~~ or ~~older for parallel compilation on some systems (''e.g.'', Mac OS Lion)~~. Non-gcc compilers ~~might~~ work as well~~, but would likely need minor changes for compilation~~.		# Use a compatible <tt>C++</tt> compiler. To compile parallel version of the code, you need a compiler that supports <tt>OpenMP</tt>. For gcc, the version should be 4.8 or newer. Non-gcc compilers such as clang-mp work as well.
	# Validation and parsing of the <tt>XML</tt> files are handled using free third party software from the [http://www.apache.org/ Apache Software Foundation] called the [http://xml.apache.org/xerces-c/index.html <tt>xerces</tt> validating XML parser]. You will need to download <tt>xerces</tt> and install it on your system. It is available in [http://xml.apache.org/xerces-c/install.html binary installs] for many systems. For others systems you will need to download the source code and [http://xml.apache.org/xerces-c/build.html build] it. Since revision 274 of the <tt>nairn-mpm-fea</tt> project, the codes require <tt>xerces 3.0</tt> or newer. Prior to this revision, the codes requied <tt>xerces 2.8</tt> or older. Unfortunately, the new versions of <tt>xerces</tt> are not compatible with the older ones.		# Validation and parsing of the <tt>XML</tt> files are handled using free third party software from the [http://www.apache.org/ Apache Software Foundation] called the [http://xml.apache.org/xerces-c/index.html <tt>xerces</tt> validating XML parser]. You will need to download <tt>xerces</tt> and install it on your system. It is available in [http://xml.apache.org/xerces-c/install.html binary installs] for many systems. For others systems you will need to download the source code and [http://xml.apache.org/xerces-c/build.html build] it. Since revision 274 of the <tt>nairn-mpm-fea</tt> project, the codes require <tt>xerces 3.0</tt> or newer. Prior to this revision, the codes requied <tt>xerces 2.8</tt> or older. Unfortunately, the new versions of <tt>xerces</tt> are not compatible with the older ones.
	# Compiling of [[OSParticulas]], [[NairnMPM]], and [[NairnFEA]] needs access to all the <tt>xerces</tt> header files. These are provided in the <tt>xerces</tt> source code downloads. Even if your system has the <tt>xerces</tt> binary installed, it may not have the header files. You can get them by [http://xml.apache.org/dist/xerces-c/stable/ downloading the xerces source code], even though you will not need to build it.		# Compiling of [[OSParticulas]], [[NairnMPM]], and [[NairnFEA]] needs access to all the <tt>xerces</tt> header files. These are provided in the <tt>xerces</tt> source code downloads. Even if your system has the <tt>xerces</tt> binary installed, it may not have the header files. You can get them by [http://xml.apache.org/dist/xerces-c/stable/ downloading the xerces source code], even though you will not need to build it.

Nairnj: /* Compilation on Supported Linux Systems */

2022-01-22T07:09:24Z

Compilation on Supported Linux Systems

← Older revision		Revision as of 07:09, 22 January 2022
Line 53:		Line 53:
	The commands for the above system will compile all source code and install the executables in <tt>nairn-mpm-fea/NairnMPM/input</tt> or <tt>nairn-mpm-fea/NairnFEA/input</tt>, respectively.		The commands for the above system will compile all source code and install the executables in <tt>nairn-mpm-fea/NairnMPM/input</tt> or <tt>nairn-mpm-fea/NairnFEA/input</tt>, respectively.

	Besides the <tt>SYSTEM</tt> parameter to specify ~~the support~~ system, you can pass additional parameters to the <tt>make</tt> command to alter the compilation process. See comments in the <tt>makefile</tt> for all the latest options.		Besides the <tt>SYSTEM</tt> parameter to specify a supported system, you can pass additional parameters to the <tt>make</tt> command to alter the compilation process. See comments in the <tt>makefile</tt> for all the latest options.

	== Other Linux Systems ==		== Other Linux Systems ==

Nairnj: /* Zia Workstation (CISRO) */

2022-01-22T07:08:50Z

Zia Workstation (CISRO)

← Older revision		Revision as of 07:08, 22 January 2022
Line 40:		Line 40:

	cd nairn-mpm-fea/NairnMPM/build		cd nairn-mpm-fea/NairnMPM/build
	make ~~SYSTEM~~=zia		make -j N YSTEM=zia

	and for [[NairnFEA]] are:		and for [[NairnFEA]] are:

	cd nairn-mpm-fea/NairnFEA/build		cd nairn-mpm-fea/NairnFEA/build
	make SYSTEM=zia		make -j N SYSTEM=zia

			where the <tt>-j N</tt> tells the make to compile in parallel using <tt>N</tt> cores.

	== Compilation on Supported Linux Systems ==		== Compilation on Supported Linux Systems ==

Nairnj: /* MPM Workstation (Oregon State University) */

2022-01-22T07:08:22Z

MPM Workstation (Oregon State University)

← Older revision		Revision as of 07:08, 22 January 2022
Line 32:		Line 32:
	cd nairn-mpm-fea/NairnFEA/build		cd nairn-mpm-fea/NairnFEA/build
	make -j 12 SYSTEM=mpm		make -j 12 SYSTEM=mpm


	where the <tt>-j 12</tt> tells the make to compile in parallel using the 12 cores on this workstation.		where the <tt>-j 12</tt> tells the make to compile in parallel using the 12 cores on this workstation.

Nairnj: /* Inferno (University of Utah) */

2022-01-22T07:07:58Z

Inferno (University of Utah)

← Older revision		Revision as of 07:07, 22 January 2022
Line 47:		Line 47:
	cd nairn-mpm-fea/NairnFEA/build		cd nairn-mpm-fea/NairnFEA/build
	make SYSTEM=zia		make SYSTEM=zia

	~~== Inferno (University of Utah) ==~~

	~~If you are using Inferno in the [http://www.utah.edu/ University or Utah], [http://www.csafe.utah.edu/ CSAFE Group], the commands for [[OSParticulas]] and [[NairnMPM]] are:~~

	~~cd nairn-mpm-fea/NairnMPM/build~~
	~~make SYSTEM=inferno~~

	~~and for [[NairnFEA]] are:~~

	~~cd nairn-mpm-fea/NairnFEA/build~~
	~~make SYSTEM=inferno~~

	== Compilation on Supported Linux Systems ==		== Compilation on Supported Linux Systems ==